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ABOUT THIS RECORD
ID:
MNEST054555
species:
Solanum lycopersicum
miRNA family:
MIR172
source:
PMRD, original name:
sly-miR172a
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCAT
miRNA*
GTGGCATAATCAAGATTCACG
mismatches:
4
bulges:
0
View larger
pre-miRNA
AT
GTGGCATAATCAAGATTCACG
TGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACG
AGAATCTTGATGATG
CTGCAT
dot-bracket secondary structure
((
(..((((.((((((((((.((
(((...(((.(((((..(((((.(((((.....))))))))))..)...)))).))))))))
.)))))))))).)))
)..)))
SIMILARITIES
miRBase
sly-MIR172a
:
2e-55
PMRD
zma-miR172d
:
0.00002
microPC
miR172
:
2e-55
UniProt
no hits
RFAM
mir-172: 0.0004
Identical with:
sly-MIR172a
from miRBase (
MNEST041542
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[
1
] Zhang J, Zeng R, Chen J, Liu X, Liao Q,
Gene. 423:1-7(2008).
,
"Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"