ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR399
source: PMRD, original name: sly-miR399
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTA miRNA* GGGCTACACTCTATTGGCATG mismatches: 3 bulges: 0 |
pre-miRNA
TAGGGCTACACTCTATTGGCATGCAACTTGATCAAATATTTGAGCTGAAATGCCAAAGGAGAGTTGCCCTA
dot-bracket secondary structure
((((((.((.((((.(((((((.((.((..(........)..)).))..))))))).)))).)).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
TAGGGCTACACTCTATTGGCATGCAACTTGATCAAATATTTGAGCTGAAATGCCAAAGGAGAGTTGCCCTA
dot-bracket secondary structure
((((((.((.((((.(((((((.((.((..(........)..)).))..))))))).)))).)).))))))
SIMILARITIES| miRBase sly-MIR399: 7e-35 PMRD ptc-miR399i: 0.00005 microPC miR399: 0.0000002 | UniProt no hits RFAM no hits |
Identical with: sly-MIR399 from miRBase (MNEST041548) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
