ABOUT THIS RECORDspecies: Solanum lycopersicum
source: PMRD, original name: sly-miR403
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAGATTCACGCACAAGCTCG miRNA* CGTTTGTGCGTGAATCTAACA mismatches: 4 bulges: 0 |
pre-miRNA
AAGAAATTGAAAATCAGGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACTCTTTTCATCTGAAAAACTGTTATTGTTTGCTAGATTCACGCAC
AAGCTCGTAATATGGCTTTTCCAATCTCTG
dot-bracket secondary structure
................(((((((.((((((....((((((((((((((((((((((..(((((....)))))...))...)))....)))))))))))))
))))....)))))).)))))))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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deep sequencing data evidence
AAGAAATTGAAAATCAGGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACTCTTTTCATCTGAAAAACTGTTATTGTTTGCTAGATTCACGCAC
AAGCTCGTAATATGGCTTTTCCAATCTCTG
dot-bracket secondary structure
................(((((((.((((((....((((((((((((((((((((((..(((((....)))))...))...)))....)))))))))))))
))))....)))))).)))))))........
SIMILARITIES| miRBase ptc-MIR403a: 0.000006 PMRD stu-miR403: 4e-41 microPC miR403: 3e-26 | UniProt no hits RFAM MIR403: 0.0001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
deep sequencing data evidence
