ABOUT THIS RECORDspecies: Solanum lycopersicum
source: PMRD, original name: sly-miR1918
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGGTGAGAGTTCGATTCTC miRNA* GAATCGAACTACCGCTAACAGA mismatches: 2 bulges: 0 |
pre-miRNA
GTTGGTTTAATTAGTTGAATTGTCATTTTGTTGGTGAGAGTTCGATTCTCCATTACGCAATCTCCTCTTCAATTTAAGAGAAAAAGATATGCTACAAGGT
GGAGAATCGAACTACCGCTAACAGAATGGAAGTTCAAATACTTAATCAAT
dot-bracket secondary structure
(((((((.......(((((((..(((((((((((((..((((((((((((((((..(((((((.(((((......)))))....)))).))).....)))
)))))))))))))..)))))))))))))..)))))))......)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
GTTGGTTTAATTAGTTGAATTGTCATTTTGTTGGTGAGAGTTCGATTCTCCATTACGCAATCTCCTCTTCAATTTAAGAGAAAAAGATATGCTACAAGGT
GGAGAATCGAACTACCGCTAACAGAATGGAAGTTCAAATACTTAATCAAT
dot-bracket secondary structure
(((((((.......(((((((..(((((((((((((..((((((((((((((((..(((((((.(((((......)))))....)))).))).....)))
)))))))))))))..)))))))))))))..)))))))......)))))))
SIMILARITIES| miRBase sly-MIR1918: 1e-81 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sly-MIR1918 from miRBase (MNEST041552) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
