ABOUT THIS RECORDspecies: Selaginella moellendorffii
miRNA family: MIR166
source: PMRD, original name: smo-miR166a
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGATTGTTGCCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
AGCAAGTCCTGGATGTGGGGATTGTTGCCTGGCTCGAGGGAGGCATTCCTTTGATCTTTTCTCTCCTGGGAAGTACTCCAGAAGAACTGTGCCAGAAATG
TGCGCTCTCGGACCAGGCTTCATTCCCCTCATCTGAGATTGCACC
dot-bracket secondary structure
.((((.((..(((((.(((((.((..((((((..((((((((...(((((..((.........))..)))))...)))).........((((((....))
.)))).))))..))))))..)).))))).)))))..))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
AGCAAGTCCTGGATGTGGGGATTGTTGCCTGGCTCGAGGGAGGCATTCCTTTGATCTTTTCTCTCCTGGGAAGTACTCCAGAAGAACTGTGCCAGAAATG
TGCGCTCTCGGACCAGGCTTCATTCCCCTCATCTGAGATTGCACC
dot-bracket secondary structure
.((((.((..(((((.(((((.((..((((((..((((((((...(((((..((.........))..)))))...)))).........((((((....))
.)))).))))..))))))..)).))))).)))))..))))))...
SIMILARITIES| miRBase smo-MIR166a: 1e-78 PMRD ptc-miR166m: 0.000000002 microPC miR166: 0.000002 | UniProt no hits RFAM mir-166: 0.00000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
