ABOUT THIS RECORDspecies: Saccharum officinarum
source: PMRD, original name: sof-miR156e
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GAGAAGTAGTCTGCTGGATGA mismatches: 11 bulges: 1 |
pre-miRNA
CGTGAGAAGTAGTCTGCTGGATGACGGCTGAACTTCCCCACGAGCCGTCTGACAGAAGAGAGAGAGCACG
dot-bracket secondary structure
((((........(((.(((...(((((((.............)))))))...))).))).......))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
CGTGAGAAGTAGTCTGCTGGATGACGGCTGAACTTCCCCACGAGCCGTCTGACAGAAGAGAGAGAGCACG
dot-bracket secondary structure
((((........(((.(((...(((((((.............)))))))...))).))).......))))
SIMILARITIES| miRBase zma-MIR156j: 0.0002 PMRD zel-miR157: 0.00005 microPC miR157: 0.0002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
