ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: PMRD, original name: sof-miR159b
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 3 bulges: 0 |
pre-miRNA
CCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTATGTGTGTATGTATTTTCGGAGAGGGAGGAGAGGAGCTAGACTCTCACGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAG
CTGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGAACCATCCATCC
dot-bracket secondary structure
...((((..(((.((.((.(((((((((((.(((.(((((.((..((((((....(((((((((.(.(((.((((.(((((....((((...((((((((
(..((((((....)))))).......((((.((.((((((........))))).).....)).)))))))))))))...))))....))))).)))).))
).).))))..))))))).))))..)).))))).))).))))))))))).))..)).)))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTATGTGTGTATGTATTTTCGGAGAGGGAGGAGAGGAGCTAGACTCTCACGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAG
CTGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGAACCATCCATCC
dot-bracket secondary structure
...((((..(((.((.((.(((((((((((.(((.(((((.((..((((((....(((((((((.(.(((.((((.(((((....((((...((((((((
(..((((((....)))))).......((((.((.((((((........))))).).....)).)))))))))))))...))))....))))).)))).))
).).))))..))))))).))))..)).))))).))).))))))))))).))..)).)))..)))).
SIMILARITIES| miRBase sof-MIR159b: 1e-150 PMRD sof-miR159a: 1e-138 microPC miR319: 2e-23 | UniProt no hits RFAM MIR159: 6e-70 |
Identical with: sof-MIR159b from miRBase (MNEST042453) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
