ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: PMRD, original name: sof-miR159c
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 3 bulges: 0 |
pre-miRNA
TGAAGACGACGACGAAGAAGAAGATGGCGAAGAAAAGTGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTC
ATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCT
TGGATTGAAGGGAGCTCCTCTCTCTTTCCTCTCTCTCT
dot-bracket secondary structure
...(((.((.((.(((..(((.(((.((........)).)))...((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.((
(((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)
)))))))))))))))))...)))..))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TGAAGACGACGACGAAGAAGAAGATGGCGAAGAAAAGTGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTC
ATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCT
TGGATTGAAGGGAGCTCCTCTCTCTTTCCTCTCTCTCT
dot-bracket secondary structure
...(((.((.((.(((..(((.(((.((........)).)))...((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.((
(((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)
)))))))))))))))))...)))..))).)))))))..
SIMILARITIES| miRBase sof-MIR159c: 1e-119 PMRD sbi-miR159b: 6e-100 microPC miR319: 6e-94 | UniProt no hits RFAM MIR159: 3e-90 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
