ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: PMRD, original name: sof-miR159d
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 3 bulges: 0 |
pre-miRNA
CCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGGGGTCGTCTATGAGATACGCTTGTGGTTTGCATGACCGATGAGC
TGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCATCCATCC
dot-bracket secondary structure
...((((..((((((.((.(((((((((((.(((.(((((.((..((((((....(((((.......((..(((((..((((..((((...((((.((((
.....((((((....))))))....)))))))).(((((........))))).))))..))))..)))))....(((..(((((.....)))).)..)))
.))......))))))).))))..)).))))).))).))))))))))).))..))))))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGGGGTCGTCTATGAGATACGCTTGTGGTTTGCATGACCGATGAGC
TGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCATCCATCC
dot-bracket secondary structure
...((((..((((((.((.(((((((((((.(((.(((((.((..((((((....(((((.......((..(((((..((((..((((...((((.((((
.....((((((....))))))....)))))))).(((((........))))).))))..))))..)))))....(((..(((((.....)))).)..)))
.))......))))))).))))..)).))))).))).))))))))))).))..))))))..)))).
SIMILARITIES| miRBase sof-MIR159d: 5e-150 PMRD sof-miR159a: 2e-140 microPC miR319: 1e-18 | UniProt no hits RFAM MIR159: 3e-65 |
Identical with: sof-MIR159d from miRBase (MNEST042455) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
