ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR166
source: PMRD, original name: sof-miR166
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* TACATGCAAATCTGAACCG mismatches: 8 bulges: 1 |
pre-miRNA
TCGGACCAGGCTTCATTCCCCCCAAAAGCAAGGGCTCCCCATGATCTTGATTTGCCGCGCGCCTCGCCTCCATCAGATGAGCTCCATCCGCTAGCTTGCT
TGCTGGGGTACATGCAAATCTGAACCG
dot-bracket secondary structure
.(((..(((..(((((...(((((.((((((((((((......((((.(((.....(((.....)))....))))))))))))...........))))))
)..)))))...))).))..)))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TCGGACCAGGCTTCATTCCCCCCAAAAGCAAGGGCTCCCCATGATCTTGATTTGCCGCGCGCCTCGCCTCCATCAGATGAGCTCCATCCGCTAGCTTGCT
TGCTGGGGTACATGCAAATCTGAACCG
dot-bracket secondary structure
.(((..(((..(((((...(((((.((((((((((((......((((.(((.....(((.....)))....))))))))))))...........))))))
)..)))))...))).))..)))..)))
SIMILARITIES| miRBase bdi-MIR166b: 0.0000000001 PMRD osa-miR166b: 0.00000003 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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