ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR167
source: PMRD, original name: sof-miR167a
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACCG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((...(
((......)))...)))).)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACCG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((...(
((......)))...)))).)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..
SIMILARITIES| miRBase sof-MIR167a: 3e-104 PMRD sof-miR167b: 8e-102 microPC miR167: 6e-81 | UniProt no hits RFAM MIR167_1: 4e-30 |
Identical with: miR167 from microPC (MNEST045730) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
