ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR168
source: PMRD, original name: sof-miR168b
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 1 |
pre-miRNA
CCGCCCCGCGCCGTCTGGGCTCGCTTGGGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGCAG
CCA
dot-bracket secondary structure
.......(((((((((((..((((((((((((..(((((.(((...((((.....)))).))).)))))..)))).)))))))).)))))..))))))..
...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CCGCCCCGCGCCGTCTGGGCTCGCTTGGGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGCAG
CCA
dot-bracket secondary structure
.......(((((((((((..((((((((((((..(((((.(((...((((.....)))).))).)))))..)))).)))))))).)))))..))))))..
...
SIMILARITIES| miRBase sof-MIR168b: 9e-54 PMRD sof-miR168a: 5e-40 microPC miR168: 2e-30 | UniProt no hits RFAM MIR168: 3e-35 |
Identical with: miR168 from microPC (MNEST046702) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
