ABOUT THIS RECORDspecies: Saccharum officinarum
source: PMRD, original name: sof-miR169
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGCAGGTTCTTCTCTTGGGCTA mismatches: 1 bulges: 3 |
pre-miRNA
TAGCCAAGGATGACTTGCCGGCAATGCTTCGATGGATCCCTAATCCCCGTCCGGCCGGGAACGTCGCACGTATGTATGTATGCGTGCATATGCTGCGAAC
TGTGAGGCATCCATATCGACCGGCAGGTTCTTCTCTTGGGCTA
dot-bracket secondary structure
((((((((((.((((((((((.......(((((((((.(((....((((......))))....(((((((((((((((....)))))))))).)))))..
....))).)))))..))))))))))))))..)).))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCGGCAATGCTTCGATGGATCCCTAATCCCCGTCCGGCCGGGAACGTCGCACGTATGTATGTATGCGTGCATATGCTGCGAAC
TGTGAGGCATCCATATCGACCGGCAGGTTCTTCTCTTGGGCTA
dot-bracket secondary structure
((((((((((.((((((((((.......(((((((((.(((....((((......))))....(((((((((((((((....)))))))))).)))))..
....))).)))))..))))))))))))))..)).))).)))))
SIMILARITIES| miRBase ssp-MIR169: 4e-66 PMRD sbi-miR169j: 0.0000005 microPC miR169: 2e-61 | UniProt no hits RFAM MIR169_2: 0.000008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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