ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR172
source: PMRD, original name: sof-miR172a
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GTTGCATCTCCGGTTTCTCA mismatches: 5 bulges: 1 |
pre-miRNA
AAGCGTTGCATCTCCGGTTTCTCACCAACCATTATTACCCCCAACCAAGAAGCGTCTGTACCGAACCACACCCACCGGTGGCGGCGCATGGCCAGCCCGC
CACCATTTCACCGTTCAGCTCAGACGCCGTCTCCACTCTCCAGCTCAACAGGAGGACTGGGGGAGTCTGTCAGGCGGTTGGGGGGAAGCGGAGCTGCTGG
TAGCCGAAGAACACTTGCCGGGGGCCACCGGACGGCACGCTGCCGGCGGCTGTGGCCGCGTCCACGCCGGTGGCGGTAGAGAATCCTGATGATGCTGCAG
dot-bracket secondary structure
....((.(((((((.((.((((((((..(((((....(((((((((.....(((((((..(.((((..........((((((((.((.......))))))
))))........)))).)..))))))).((((..((((((((((((.....)))..)).))))))).....)))))))))))))...(((((((((((((
((((..(((....)))((((.((....))...))))..)))))))))))))....)))).........))))).))).))))).)).)).))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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AAGCGTTGCATCTCCGGTTTCTCACCAACCATTATTACCCCCAACCAAGAAGCGTCTGTACCGAACCACACCCACCGGTGGCGGCGCATGGCCAGCCCGC
CACCATTTCACCGTTCAGCTCAGACGCCGTCTCCACTCTCCAGCTCAACAGGAGGACTGGGGGAGTCTGTCAGGCGGTTGGGGGGAAGCGGAGCTGCTGG
TAGCCGAAGAACACTTGCCGGGGGCCACCGGACGGCACGCTGCCGGCGGCTGTGGCCGCGTCCACGCCGGTGGCGGTAGAGAATCCTGATGATGCTGCAG
dot-bracket secondary structure
....((.(((((((.((.((((((((..(((((....(((((((((.....(((((((..(.((((..........((((((((.((.......))))))
))))........)))).)..))))))).((((..((((((((((((.....)))..)).))))))).....)))))))))))))...(((((((((((((
((((..(((....)))((((.((....))...))))..)))))))))))))....)))).........))))).))).))))).)).)).))))).))..
SIMILARITIES| miRBase bdi-MIR172d: 0.00006 PMRD osa-miR172p: 0.000001 microPC miR172: 0.000001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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