ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR396
source: PMRD, original name: sof-miR396
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
AGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTAAGAGGAGCAGCTCGAAGCCTCGAACTCTACCTGCATGAGCAGGTGCAGTTC
AATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAA
dot-bracket secondary structure
...(((((((((((((..(.((((((((((((.(((((((((((((((..((((((.((.((((....)))).)))).))).)...)).)))))))))))
)).)))))))))))).)..))))))).)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTAAGAGGAGCAGCTCGAAGCCTCGAACTCTACCTGCATGAGCAGGTGCAGTTC
AATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAA
dot-bracket secondary structure
...(((((((((((((..(.((((((((((((.(((((((((((((((..((((((.((.((((....)))).)))).))).)...)).)))))))))))
)).)))))))))))).)..))))))).)))))).
SIMILARITIES| miRBase sof-MIR396: 4e-72 PMRD sbi-miR396b: 5e-53 microPC miR396: 7e-49 | UniProt no hits RFAM MIR396: 5e-41 |
Identical with: sof-MIR396 from miRBase (MNEST042461) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
