ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR408
source: PMRD, original name: sof-miR408b
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCCTCTTCCCTGGC miRNA* CAGGGATGAGGCAGAGCATGG mismatches: 4 bulges: 0 |
pre-miRNA
AGAAGATGGGTATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATT
TATGTTTGCTTGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGA
GAGGGCTGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTTGCCCTTGC
dot-bracket secondary structure
.......(((((((((.((((.((((((.(((((((.(((.((((.(((((...((((...........((((.((((((((.(((((((.(((..(...
....((((((((((((((((.(.....).))))))))......))))))))...............(((.....)))...)..))).)))))))...)).
)))))).)))).....((..(....)..))))))..))))).)))).))).))))))).)))))).))))..)))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGAAGATGGGTATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATT
TATGTTTGCTTGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGA
GAGGGCTGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTTGCCCTTGC
dot-bracket secondary structure
.......(((((((((.((((.((((((.(((((((.(((.((((.(((((...((((...........((((.((((((((.(((((((.(((..(...
....((((((((((((((((.(.....).))))))))......))))))))...............(((.....)))...)..))).)))))))...)).
)))))).)))).....((..(....)..))))))..))))).)))).))).))))))).)))))).))))..)))).)))))....
SIMILARITIES| miRBase sof-MIR408b: 2e-162 PMRD sof-miR408c: 4e-160 microPC miR408: 0.0002 | UniProt no hits RFAM MIR408: 0.000000000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
