ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR408
source: PMRD, original name: sof-miR408e
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGACTCTTCCCTGGC miRNA* CAGGGATGAGGCAGAGCATGGG mismatches: 4 bulges: 1 |
pre-miRNA
AGAAGATGGGTATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGAGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATT
TATGTTTGCTTGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGA
GACGGATGAGAGCTCAGCTGGTGTCCTGTTGTTGCTTACTTCCCTGCACTGACTCTTCCCTGGCTCCCCACCGTTGCCCTTGC
dot-bracket secondary structure
.......(((((((((.((((.((((((.(((.(((.(((.((((..((((...(((((..((..(((...((((((.((.(.(((((((.(((..(...
....((((((((((((((((.(.....).))))))))......))))))))...............(((.....)))...)..))).))))))).)..))
))))))(((....)))..))).))..)))))..))))...))))))).))).))).)))))).))))..)))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGAAGATGGGTATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGAGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATT
TATGTTTGCTTGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGA
GACGGATGAGAGCTCAGCTGGTGTCCTGTTGTTGCTTACTTCCCTGCACTGACTCTTCCCTGGCTCCCCACCGTTGCCCTTGC
dot-bracket secondary structure
.......(((((((((.((((.((((((.(((.(((.(((.((((..((((...(((((..((..(((...((((((.((.(.(((((((.(((..(...
....((((((((((((((((.(.....).))))))))......))))))))...............(((.....)))...)..))).))))))).)..))
))))))(((....)))..))).))..)))))..))))...))))))).))).))).)))))).))))..)))).)))))....
SIMILARITIES| miRBase sof-MIR408e: 1e-160 PMRD sof-miR408a: 9e-149 microPC no hits | UniProt no hits RFAM MIR408: 0.0000000000003 |
Identical with: sof-MIR408e from miRBase (MNEST042466) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
