ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR437
source: PMRD, original name: sof-miR437
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTTAGAGAAGTTTGACTT miRNA* GTCAAACCTCTCTAACTTTGA mismatches: 1 bulges: 0 |
pre-miRNA
CAAGTCAAACCTCTCTAACTTTGATCAAGTTTATAGAAAAATGCACCAAAATCTAGAATATCAAACTAGTTCCATTAAATTCTCCATGAATTGTAGATGA
TAATATATTTTTTCTAAAAACTTGATCAAAGTTAGAGAAGTTTGACTTA
dot-bracket secondary structure
.(((((((((.(((((((((((((((((((((.((((((((...........((((.........))))...((((.(((((.....)))))...)))).
........)))))))).))))))))))))))))))))).))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAAGTCAAACCTCTCTAACTTTGATCAAGTTTATAGAAAAATGCACCAAAATCTAGAATATCAAACTAGTTCCATTAAATTCTCCATGAATTGTAGATGA
TAATATATTTTTTCTAAAAACTTGATCAAAGTTAGAGAAGTTTGACTTA
dot-bracket secondary structure
.(((((((((.(((((((((((((((((((((.((((((((...........((((.........))))...((((.(((((.....)))))...)))).
........)))))))).))))))))))))))))))))).))))))))).
SIMILARITIES| miRBase ssp-MIR437a: 3e-45 PMRD sbi-miR437g: 5e-19 microPC miR437: 3e-45 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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