ABOUT THIS RECORDspecies: Sorghum propinquum
source: PMRD, original name: spr-miR156
Taxonomy by NCBI:
Sorghum propinquum Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCTACTGCTACCGTCTTG mismatches: 5 bulges: 2 |
pre-miRNA
TGACAGAAGAGAGAGAGCACATTCCGAGTCGAGCACGCGAGTCAGCCCGTCGGAGAACATCTTGTTGCCCCCGCCGGCGCTGCTGCTGCTGCTGCTCTCG
GGTGGTGCTACTGCTACCGTCTTGA
dot-bracket secondary structure
.(((.(.((..((..(((((..((((((...((((.((.((((((((((.(((.(..((......))..)))).))).))))..)))))))))...))))
))..))))).)).)).).)))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGACAGAAGAGAGAGAGCACATTCCGAGTCGAGCACGCGAGTCAGCCCGTCGGAGAACATCTTGTTGCCCCCGCCGGCGCTGCTGCTGCTGCTGCTCTCG
GGTGGTGCTACTGCTACCGTCTTGA
dot-bracket secondary structure
.(((.(.((..((..(((((..((((((...((((.((.((((((((((.(((.(..((......))..)))).))).))))..)))))))))...))))
))..))))).)).)).).)))....
SIMILARITIES| miRBase zma-MIR156j: 0.0001 PMRD sof-miR156g: 7e-21 microPC miR157: 0.0001 | UniProt sp|Q6YZE8|SPL16_ORYSJ: 0.00004 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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