ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR166
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGGACCAGGCTTCATTCCCA miRNA* GGAATTCCGG mismatches: 1 bulges: 9 |
pre-miRNA
CCGGACCAGGCTTCATTCCCATCATTTGCACCCATTCGACAGCAGTTCCGGTCGCCTTGGACAGGAACGCTGTCACGGACGCGTGGGTCGACGATATCCC
GGGAATTCCGG
dot-bracket secondary structure
(((((.........((((((.....((((((((((((((((((.(((((.(((......))).)))))))))))...))...)))))).).)))......
)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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CCGGACCAGGCTTCATTCCCATCATTTGCACCCATTCGACAGCAGTTCCGGTCGCCTTGGACAGGAACGCTGTCACGGACGCGTGGGTCGACGATATCCC
GGGAATTCCGG
dot-bracket secondary structure
(((((.........((((((.....((((((((((((((((((.(((((.(((......))).)))))))))))...))...)))))).).)))......
)))))))))))
SIMILARITIES| miRBase ptc-MIR166m: 0.0003 PMRD sbi-miR165: 0.0000000004 microPC no hits | UniProt sp|Q39123|ATHB8_ARATH: 0.000006 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
