ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR170a
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGATTGAGCCGTGCCAATATC miRNA* TATTGGTGCGGTTCAATCAGA mismatches: 3 bulges: 0 |
pre-miRNA
CGGTATTGGTGCGGTTCAATCAGAGAGCTGGCGCCCCAGGAGGCAAGGGGTTCCTCCCTTCGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
.((((((((..((((((((((..((.(..((.(((((.........))))).))..)))..))))))))))..))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGGTATTGGTGCGGTTCAATCAGAGAGCTGGCGCCCCAGGAGGCAAGGGGTTCCTCCCTTCGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
.((((((((..((((((((((..((.(..((.(((((.........))))).))..)))..))))))))))..))))))))
SIMILARITIES| miRBase tae-MIR171b: 9e-41 PMRD tae-miR171b: 4e-40 microPC miR171: 0.0000000002 | UniProt no hits RFAM MIR171_1: 0.000000004 |
Identical with: tae-miR171b from PMRD (MNEST054681) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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