ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR172
source: PMRD, original name: tae-miR172a
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GCAGGCCT mismatches: 15 bulges: 0 |
pre-miRNA
AGAATCCTGATGATGCTGCAGCGGACGACGGCAGGGCGGCAGGAGGAGGAGCTGCTGCTGCCACCTGCCATGCCCAGCTGGGAACAGCCCCTGCAGGCCT
dot-bracket secondary structure
...............((((((.((.....(((((((((((((.((......)).)))))))..)))))).......((((....))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
download this record
AGAATCCTGATGATGCTGCAGCGGACGACGGCAGGGCGGCAGGAGGAGGAGCTGCTGCTGCCACCTGCCATGCCCAGCTGGGAACAGCCCCTGCAGGCCT
dot-bracket secondary structure
...............((((((.((.....(((((((((((((.((......)).)))))))..)))))).......((((....))))))))))))....
SIMILARITIES| miRBase bdi-MIR172d: 0.00002 PMRD hvv-miR172c: 0.000000005 microPC miR172: 0.0003 | UniProt no hits RFAM mir-172: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
download this record
