ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR172
source: PMRD, original name: tae-miR172b
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GCGGCAATGGCAGGGTGTGAGGAGGAGCTGCTGTCACCTTCCATGCCCAGCTAGGAGCACCCCC mismatches: 10 bulges: 56 |
pre-miRNA
AGAATCCTGATGATGCTGCAGCGGATGACGATGACGAAGAGAACAGCGGCAATGGCAGGGTGTGAGGAGGAGCTGCTGTCACCTTCCATGCCCAGCTAGG
AGCACCCCCCTCAGGCCT
dot-bracket secondary structure
.....(((((...((((((..((.....))....(.....)....)))))).((((.(((((((.(((((.((....))..)))))))))))).))))..
..........)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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AGAATCCTGATGATGCTGCAGCGGATGACGATGACGAAGAGAACAGCGGCAATGGCAGGGTGTGAGGAGGAGCTGCTGTCACCTTCCATGCCCAGCTAGG
AGCACCCCCCTCAGGCCT
dot-bracket secondary structure
.....(((((...((((((..((.....))....(.....)....)))))).((((.(((((((.(((((.((....))..)))))))))))).))))..
..........)))))...
SIMILARITIES| miRBase bdi-MIR172d: 0.00002 PMRD osa-miR172o: 0.000000006 microPC miR172: 0.0004 | UniProt no hits RFAM mir-172: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
download this record
