ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR172c
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGATCTTGATGATGCTGCAG miRNA* GTAAAAGCATCAGTCAAATGATTAA mismatches: 2 bulges: 6 |
pre-miRNA
AGGATCTTGATGATGCTGCAGAGAAGGCTGTAAAAGCATCAGTCAAATGATTAA
dot-bracket secondary structure
..(((((((((((((((((((......))))...))))))).))))..))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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AGGATCTTGATGATGCTGCAGAGAAGGCTGTAAAAGCATCAGTCAAATGATTAA
dot-bracket secondary structure
..(((((((((((((((((((......))))...))))))).))))..))))..
SIMILARITIES| miRBase no hits PMRD asp-miR172: 7e-25 microPC no hits | UniProt no hits RFAM no hits |
Identical with: asp-miR172 from PMRD (MNEST046907) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
