ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR1117
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTACCGGTTCGTGGCACGAACC miRNA* TTCGTGCCACAAACCGCGACTAAAA mismatches: 3 bulges: 1 |
pre-miRNA
GTTTGAAAATGGGACCTTTAGTACCGGTTCGTGGCACGAACCGGGACTAAAGGTCTTCAACCCCATTAGTTCCGGTTCGTGCCACAAACCGCGACTAAAA
GGGAGGAGCTTTAGTCGC
dot-bracket secondary structure
(.(((((.......((((((((..(((((.((((((((((((((((((((.((.........)).)))))))))))))))))))).)))))..))).)))
)).......))))).)..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GTTTGAAAATGGGACCTTTAGTACCGGTTCGTGGCACGAACCGGGACTAAAGGTCTTCAACCCCATTAGTTCCGGTTCGTGCCACAAACCGCGACTAAAA
GGGAGGAGCTTTAGTCGC
dot-bracket secondary structure
(.(((((.......((((((((..(((((.((((((((((((((((((((.((.........)).)))))))))))))))))))).)))))..))).)))
)).......))))).)..
SIMILARITIES| miRBase tae-MIR1117: 1e-62 PMRD tae-miR1131: 0.0000004 microPC miR1131: 0.000001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
