ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1125
source: PMRD, original name: tae-miR1125
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCAACGAGACCAACTGCGGCGG miRNA* GCCACATTCGGTCTTGTTGGTTAA mismatches: 4 bulges: 0 |
pre-miRNA
TTTGGCCGTAAATTTAACCAACGAGACCAACTGCGGCGGGAACAAAAATTATATCGCTGAATTATATCAAAAATACNAATTCAGTAGCATAGGTTTTGCT
CCCGCCACATTCGGTCTTGTTGGTTAAATTTACGGTCAAA
dot-bracket secondary structure
.(((((((((((((((((((((((((((...((.(((((((.(((((.((((.(..(((((((..............)))))))..).)))).))))).)
)))))).))...))))))))))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TTTGGCCGTAAATTTAACCAACGAGACCAACTGCGGCGGGAACAAAAATTATATCGCTGAATTATATCAAAAATACNAATTCAGTAGCATAGGTTTTGCT
CCCGCCACATTCGGTCTTGTTGGTTAAATTTACGGTCAAA
dot-bracket secondary structure
.(((((((((((((((((((((((((((...((.(((((((.(((((.((((.(..(((((((..............)))))))..).)))).))))).)
)))))).))...))))))))))))))))))))))))))).
SIMILARITIES| miRBase tae-MIR1125: 1e-69 PMRD no hits microPC miR1125: 5e-56 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
