ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR441
source: PMRD, original name: tae-miR1126
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACTATGGACTACATACGGAG miRNA* TCGTATGTGGTTCATAGTAAAAT mismatches: 3 bulges: 0 |
pre-miRNA
GTACTCTCTCCGTTCCTAAATATAAGTCTTTATAGAAATTCCACTATGGACTACATACGGAGCAAAATAAATGAATCTACACTCTAAAATGCATCTACAT
ACATTCGTATGTGGTTCATAGTAAAATCTCTACAAAGACTTATATTTAGAAACGGAGGGAGTAT
dot-bracket secondary structure
((((((((((((((.((((((((((((((((.((((.(((..(((((((((((((((((((......((.(((..................))).))...
...)))))))))))))))))))..))).)))).)))))))))))))))).))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GTACTCTCTCCGTTCCTAAATATAAGTCTTTATAGAAATTCCACTATGGACTACATACGGAGCAAAATAAATGAATCTACACTCTAAAATGCATCTACAT
ACATTCGTATGTGGTTCATAGTAAAATCTCTACAAAGACTTATATTTAGAAACGGAGGGAGTAT
dot-bracket secondary structure
((((((((((((((.((((((((((((((((.((((.(((..(((((((((((((((((((......((.(((..................))).))...
...)))))))))))))))))))..))).)))).)))))))))))))))).))))))))))))))
SIMILARITIES| miRBase tae-MIR1126: 6e-90 PMRD tae-miR1122: 1e-23 microPC miR1126: 5e-41 | UniProt no hits RFAM MIR1122: 4e-45 |
Identical with: tae-MIR1126 from miRBase (MNEST042659) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
