ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR1129
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCGAGCCAGCGGAGACCGGCAG miRNA* TCGTCGCTCCACCATGGAATCAGCTGCTGATATGCTCGAACACGACCTGCAAGCT mismatches: 4 bulges: 34 |
pre-miRNA
CGGCCGCCATTCAGCCANAAGAAGCAGCGAGCCAGCGGAGACCGGCAGCCAACCAAGGGCGTCGTCGCTCCACCATGGAATCAGCTGCTGATATGCTCGA
ACACGACCTGCAAGCTTCATGTATCTGCAACACCCCTGCTCCTCATCCACGACCCAAGTGACCTGAAAGAGCAAGCTGCTGCAGAGGGCAATCCTCGATA
TCTAAGAAGACCTCGGGCTTATTAGGGGAAGAGAGCTCGTGCCAGATCCACTCCCAACTGCCTCCGTCCACCATGGACGA
dot-bracket secondary structure
.(((.(((.....(((....(((((..(((((((((((.(((.(((.(((.......)))))))))..(((.....))).....))))))....))))).
....(.....)..))))).....((((((.((.(..(((((.(((..(((.......)))...)))..))))).).)).)))))).)))......(((..
(((....)))..)))))).......((((.((..((....))....))...))))....)))..(((((.....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CGGCCGCCATTCAGCCANAAGAAGCAGCGAGCCAGCGGAGACCGGCAGCCAACCAAGGGCGTCGTCGCTCCACCATGGAATCAGCTGCTGATATGCTCGA
ACACGACCTGCAAGCTTCATGTATCTGCAACACCCCTGCTCCTCATCCACGACCCAAGTGACCTGAAAGAGCAAGCTGCTGCAGAGGGCAATCCTCGATA
TCTAAGAAGACCTCGGGCTTATTAGGGGAAGAGAGCTCGTGCCAGATCCACTCCCAACTGCCTCCGTCCACCATGGACGA
dot-bracket secondary structure
.(((.(((.....(((....(((((..(((((((((((.(((.(((.(((.......)))))))))..(((.....))).....))))))....))))).
....(.....)..))))).....((((((.((.(..(((((.(((..(((.......)))...)))..))))).).)).)))))).)))......(((..
(((....)))..)))))).......((((.((..((....))....))...))))....)))..(((((.....))))).
SIMILARITIES| miRBase tae-MIR1129: 4e-157 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
