ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1131
source: PMRD, original name: tae-miR1131
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTACCGGTTCGTGGCTAACC miRNA* TTCGTGCCAGGAACCGGTACTAAT mismatches: 2 bulges: 2 |
pre-miRNA
CATTAGTACCGGTTCGTGGCTAACCTTTAGCACCGGTTCGTGCCAGGAACCGGTACTAATGAGGGTGGTGGCAGGATGTTGTCAGTCTGGGCCCCCTCCA
dot-bracket secondary structure
(((((((((((((((.((((.((((.........))))...)))).))))))))))))))).(((.((.(((.((((.......))))..))))).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CATTAGTACCGGTTCGTGGCTAACCTTTAGCACCGGTTCGTGCCAGGAACCGGTACTAATGAGGGTGGTGGCAGGATGTTGTCAGTCTGGGCCCCCTCCA
dot-bracket secondary structure
(((((((((((((((.((((.((((.........))))...)))).))))))))))))))).(((.((.(((.((((.......))))..))))).))).
SIMILARITIES| miRBase tae-MIR1131: 5e-52 PMRD tae-miR1117: 0.0000003 microPC miR1131: 4e-25 | UniProt no hits RFAM no hits |
Identical with: miR1131 from microPC (MNEST045252) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
