ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR441
source: PMRD, original name: tae-miR1132
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATTATGGAACGGAAGGAG miRNA* CCCTCCGTTTCACAATGTA mismatches: 2 bulges: 0 |
pre-miRNA
TACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATAGGTGTTAATGAATCTAGACATCTATATATATCTAGATTCATTAACAC
CTATATGAATGTGGGAAATGTTAGAATGACTTACATTATGGAACGGAAGGAGTA
dot-bracket secondary structure
((((((.(((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.((......)).)))))))))))))))))
))))))))))))))))))))))))))))))))))))).))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATAGGTGTTAATGAATCTAGACATCTATATATATCTAGATTCATTAACAC
CTATATGAATGTGGGAAATGTTAGAATGACTTACATTATGGAACGGAAGGAGTA
dot-bracket secondary structure
((((((.(((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.((......)).)))))))))))))))))
))))))))))))))))))))))))))))))))))))).))))))))).))))))
SIMILARITIES| miRBase tae-MIR1132: 5e-84 PMRD osa-miR809d: 3e-51 microPC miR809: 4e-23 | UniProt no hits RFAM MIR1122: 9e-83 |
Identical with: tae-MIR1132 from miRBase (MNEST042665) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
