ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1139
source: PMRD, original name: tae-miR1139
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGTAACATACACTAGTAACA miRNA* TTACTATTGAAGTTACTCCCA mismatches: 4 bulges: 1 |
pre-miRNA
GCCACAGTGGAGAGTAACATACACTAGTAACATACACATATCCCTAGAACTATATAACTACCTTCATAGKGGTAGCAACATAAGTGTGGTATCATGCAAA
GCTTCATTTATTAGGTTATAGACTCATATTGCATTGGGACATGTGATGTTATAGTAACTAGCTAAGTTACTCAAACTACCTCTCTCCTCGATGTTACTAT
TGAAGTTACTCCCACT
dot-bracket secondary structure
.....(((((.(((((((...((.(((((((((.(((((.((((....(((((((..(((((........)))))........)))))))...((((((.
......(((((......)))))......)))))).)))).)))))..(((..(((((((.....)))))))..)))..............))))))))).
))..))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GCCACAGTGGAGAGTAACATACACTAGTAACATACACATATCCCTAGAACTATATAACTACCTTCATAGKGGTAGCAACATAAGTGTGGTATCATGCAAA
GCTTCATTTATTAGGTTATAGACTCATATTGCATTGGGACATGTGATGTTATAGTAACTAGCTAAGTTACTCAAACTACCTCTCTCCTCGATGTTACTAT
TGAAGTTACTCCCACT
dot-bracket secondary structure
.....(((((.(((((((...((.(((((((((.(((((.((((....(((((((..(((((........)))))........)))))))...((((((.
......(((((......)))))......)))))).)))).)))))..(((..(((((((.....)))))))..)))..............))))))))).
))..))))))))))))
SIMILARITIES| miRBase tae-MIR1139: 5e-120 PMRD bdi-miR1139: 0.00000004 microPC no hits | UniProt no hits RFAM no hits |
Identical with: tae-MIR1139 from miRBase (MNEST042672) |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
