ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR2005
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGTGTATAGCTCAGTTGG miRNA* ATACAGAGCCGCGCCCTT mismatches: 2 bulges: 3 |
pre-miRNA
CAGTACTATACCATACAGAGCCGCGCCCTTGTGATATGATAAGAAGAAAAGGGGCCAGGCCGCCCTCTTTTCTTTTCCGCAGGGTGTATAGCTCAGTTGG
TAGAGCATTG
dot-bracket secondary structure
((((.((.(((((.((.((((.(((((((.(((....((...(((((((((((((......)))).)))))))))))))))))))))...)))).)))))
)).)).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGTACTATACCATACAGAGCCGCGCCCTTGTGATATGATAAGAAGAAAAGGGGCCAGGCCGCCCTCTTTTCTTTTCCGCAGGGTGTATAGCTCAGTTGG
TAGAGCATTG
dot-bracket secondary structure
((((.((.(((((.((.((((.(((((((.(((....((...(((((((((((((......)))).)))))))))))))))))))))...)))).)))))
)).)).))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 0.00000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
