ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR2009b
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGAGAAGGCAGATCATA miRNA* TGATCTGCTTCTCATCTGAAG mismatches: 0 bulges: 1 |
pre-miRNA
GGTCTTTAGATGAGAAGGCAGATCATAATAGCTGAGCGAAATGTAAGTGATACCGTTGCTCAATTGTTATGATCTGCTTCTCATCTGAAGACT
dot-bracket secondary structure
(((((((((((((((((.(((((((((((((.(((((((...(((.....)))..))))))).))))))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GGTCTTTAGATGAGAAGGCAGATCATAATAGCTGAGCGAAATGTAAGTGATACCGTTGCTCAATTGTTATGATCTGCTTCTCATCTGAAGACT
dot-bracket secondary structure
(((((((((((((((((.(((((((((((((.(((((((...(((.....)))..))))))).))))))))))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD tae-miR2009a: 1e-37 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
