ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR2025
source: PMRD, original name: tae-miR2025
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCCGC miRNA* GGGGTCGAACTGGGAACACAT mismatches: 2 bulges: 0 |
pre-miRNA
TCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGCCCCCGCTGGA
dot-bracket secondary structure
(((.((((((.(((.((((((((((((((((((.((..(((((.......)))))..)).))))...)))))))))))))).))).)))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGCCCCCGCTGGA
dot-bracket secondary structure
(((.((((((.(((.((((((((((((((((((.((..(((((.......)))))..)).))))...)))))))))))))).))).)))))).)))
SIMILARITIES| miRBase tae-MIR398: 1e-49 PMRD vvi-miR398c: 0.00000007 microPC miR398: 0.00000007 | UniProt no hits RFAM MIR398: 0.0000003 |
Identical with: tae-MIR398 from miRBase (MNEST042645) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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