ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR172
source: PMRD, original name: tca-miR172
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GCAGCAGCAGGGTTCT mismatches: 1 bulges: 3 |
pre-miRNA
AGAATCCTGATGATGCTGCAGTAGAGANCAGTGGCATTGGTGTAACACTGACCTGACCATGCGTTTGCCATGCCCAATCGGGGAGACCTTGCGGAGGACC
TAATTCAACTCGATTCACCATTGCTCTTTCCTCGCTAGGAAAGAATCTAGGATATCCACTATTCCAAAAAATAGGCTGATCTGACGGCCCTACTGGTCCT
TTGAAAGGTGGACCACCCACTGTTGCAGCAGCAGGGTTCT
dot-bracket secondary structure
(((((((((....((((((((.......((((((...((((..........(((((....((((.....))))....)))))...(((((.(((((((((
...........(((...((.....((((((((....)))))))).....))..))).................(((((......))))).....))))))
))).)))))..)))).)))))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
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AGAATCCTGATGATGCTGCAGTAGAGANCAGTGGCATTGGTGTAACACTGACCTGACCATGCGTTTGCCATGCCCAATCGGGGAGACCTTGCGGAGGACC
TAATTCAACTCGATTCACCATTGCTCTTTCCTCGCTAGGAAAGAATCTAGGATATCCACTATTCCAAAAAATAGGCTGATCTGACGGCCCTACTGGTCCT
TTGAAAGGTGGACCACCCACTGTTGCAGCAGCAGGGTTCT
dot-bracket secondary structure
(((((((((....((((((((.......((((((...((((..........(((((....((((.....))))....)))))...(((((.(((((((((
...........(((...((.....((((((((....)))))))).....))..))).................(((((......))))).....))))))
))).)))))..)))).)))))))))))))).)))))))))
SIMILARITIES| miRBase ghr-MIR172: 0.00005 PMRD gra-miR172b: 1e-36 microPC miR172: 0.0008 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
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