ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR169_1
source: PMRD, original name: vvi-miR169y
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCGAAGGATGACTTGCCTA miRNA* GGCAAGTCTCCTTGGCACC mismatches: 3 bulges: 2 |
pre-miRNA
CGTTGTTTGGTAGCGAAGGATGACTTGCCTACAGCCTCCTTAAGGTTTCAAAATACCGAGCTTGTCTACCTTTGATCAAATGATTCAAGAAACAAAAGAA
AAGAAAGGCCATGGCAGCCATCCATCAGAGTCAACATGAGAATCATGTTCTATAGAAATTGGAGTCATTCTTGAGAATGAACACGACACTATTAGCTTGG
AATCTATAATGTGGTTTATGGCAAGTCTCCTTGGCACCTGATGGCCTC
dot-bracket secondary structure
.((..((.(((.((.(((((.((((((((...((((.(.((((((((........(((((((((((...(((.((((....)))).)))...........
......(((.......))).((((........((((((.....))))))..........)))).((((((....))))))....)))).....)))))))
))))).))).).))))...))))))))))))).))))).))..))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
CGTTGTTTGGTAGCGAAGGATGACTTGCCTACAGCCTCCTTAAGGTTTCAAAATACCGAGCTTGTCTACCTTTGATCAAATGATTCAAGAAACAAAAGAA
AAGAAAGGCCATGGCAGCCATCCATCAGAGTCAACATGAGAATCATGTTCTATAGAAATTGGAGTCATTCTTGAGAATGAACACGACACTATTAGCTTGG
AATCTATAATGTGGTTTATGGCAAGTCTCCTTGGCACCTGATGGCCTC
dot-bracket secondary structure
.((..((.(((.((.(((((.((((((((...((((.(.((((((((........(((((((((((...(((.((((....)))).)))...........
......(((.......))).((((........((((((.....))))))..........)))).((((((....))))))....)))).....)))))))
))))).))).).))))...))))))))))))).))))).))..))...
SIMILARITIES| miRBase vvi-MIR169y: 7e-140 PMRD ptc-miR169k: 0.0000008 microPC no hits | UniProt no hits RFAM MIR169_2: 1e-138 |
Identical with: vvi-MIR169y from miRBase (MNEST041621) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
