ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR171_1
source: PMRD, original name: vvi-miR171a
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCATG miRNA* TGATGTTGGGACGGCTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
TGGTGGGAAGCGTGATGTTGGGACGGCTCAATCAAACCAAAGATCTCAATGGTTGAGTCCTTTAATCTGATTGAGCCGTGCCAATATCATGTTCAATAC
dot-bracket secondary structure
..(((...(((((((((((((.((((((((((((....((((..((((.....))))..))))....)))))))))))).)))))))))))))...)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
TGGTGGGAAGCGTGATGTTGGGACGGCTCAATCAAACCAAAGATCTCAATGGTTGAGTCCTTTAATCTGATTGAGCCGTGCCAATATCATGTTCAATAC
dot-bracket secondary structure
..(((...(((((((((((((.((((((((((((....((((..((((.....))))..))))....)))))))))))).)))))))))))))...)))
SIMILARITIES| miRBase vvi-MIR171a: 2e-51 PMRD aqc-miR171b: 2e-17 microPC miR171: 0.0000000000003 | UniProt no hits RFAM MIR171_1: 2e-48 |
Identical with: vvi-MIR171a from miRBase (MNEST041622) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
