ABOUT THIS RECORDspecies: Vitis vinifera
source: PMRD, original name: vvi-miR171g
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGAACCAATATCACC miRNA* CCATGTTGGTTCCATCGGTG mismatches: 6 bulges: 1 |
pre-miRNA
GCCAGCCTCTCCATGTTGGTTCCATCGGTGGGGGACACCAACTCCTTGAGCCGAACCAATATCACCCGAGCCAAAT
dot-bracket secondary structure
....(.(((...((((((((((..((((.((((........))))))))...)))))))))).....))).)....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
GCCAGCCTCTCCATGTTGGTTCCATCGGTGGGGGACACCAACTCCTTGAGCCGAACCAATATCACCCGAGCCAAAT
dot-bracket secondary structure
....(.(((...((((((((((..((((.((((........))))))))...)))))))))).....))).)....
SIMILARITIES| miRBase vvi-MIR171g: 8e-38 PMRD zma-miR171k: 0.0008 microPC miR171: 0.0008 | UniProt no hits RFAM no hits |
Identical with: vvi-MIR171g from miRBase (MNEST041628) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
