ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR397
source: PMRD, original name: vvi-miR397b
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATG miRNA* TTGGCGCTGCACTCAATCATG mismatches: 3 bulges: 0 |
pre-miRNA
GAAGAAAACATCATTGAGTGCAGCGTTGATGAAACTGAAGTATTCCATTTTTCAGCTTCTTTGAAGTCCGGCAAGATGGGTTCTGGTTGATTCCATTGGC
GCTGCACTCAATCATGTC
dot-bracket secondary structure
.......((((.((((((((((((((..(((.((((..((...((((((((.(.(((((...)))))...).))))))))..)))))).....)))..))
)))))))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAAGAAAACATCATTGAGTGCAGCGTTGATGAAACTGAAGTATTCCATTTTTCAGCTTCTTTGAAGTCCGGCAAGATGGGTTCTGGTTGATTCCATTGGC
GCTGCACTCAATCATGTC
dot-bracket secondary structure
.......((((.((((((((((((((..(((.((((..((...((((((((.(.(((((...)))))...).))))))))..)))))).....)))..))
)))))))))))).)))).
SIMILARITIES| miRBase vvi-MIR397a: 1e-62 PMRD vvi-miR397a: 1e-62 microPC miR397: 0.000001 | UniProt no hits RFAM MIR397: 2e-61 |
Identical with: vvi-MIR397a from miRBase (MNEST041664) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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