ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR399
source: PMRD, original name: vvi-miR399f
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCGAAGGAGATTTGTCCTG miRNA* TTAGAGGGCCAAATCTGCTTTGGCATG mismatches: 1 bulges: 6 |
pre-miRNA
GTTGCATTAGAGGGCCAAATCTGCTTTGGCATGAAGCCCATTTAGCAGGCTCGTCTGTGTCTGCAGTCTTCTCGCTGCCGAAGGAGATTTGTCCTGCAAT
TCTTCTG
dot-bracket secondary structure
((((((.....((((.((((((.((((((((.((((...(((..((((((........)))))))))))))....)))))))).))))))))))))))))
.......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
GTTGCATTAGAGGGCCAAATCTGCTTTGGCATGAAGCCCATTTAGCAGGCTCGTCTGTGTCTGCAGTCTTCTCGCTGCCGAAGGAGATTTGTCCTGCAAT
TCTTCTG
dot-bracket secondary structure
((((((.....((((.((((((.((((((((.((((...(((..((((((........)))))))))))))....)))))))).))))))))))))))))
.......
SIMILARITIES| miRBase vvi-MIR399f: 4e-56 PMRD vvi-miR399e: 0.0003 microPC no hits | UniProt no hits RFAM mir-399: 3e-54 |
Identical with: vvi-MIR399f from miRBase (MNEST041673) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
