ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR399
source: PMRD, original name: vvi-miR399h
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCAATCCTCCTTTGGCAGA mismatches: 2 bulges: 0 |
pre-miRNA
AGGAATAACAGTGCAATCCTCCTTTGGCAGAAAGATCATGCACATGCATACTTCTGTTTTGCCAAAGGAGAATTGCCCTGCCATTCGCTC
dot-bracket secondary structure
..((((..(((.(((((.(((((((((((((((((..((((....))))...))).)))))))))))))).))))).)))..))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
AGGAATAACAGTGCAATCCTCCTTTGGCAGAAAGATCATGCACATGCATACTTCTGTTTTGCCAAAGGAGAATTGCCCTGCCATTCGCTC
dot-bracket secondary structure
..((((..(((.(((((.(((((((((((((((((..((((....))))...))).)))))))))))))).))))).)))..))))....
SIMILARITIES| miRBase vvi-MIR399h: 4e-46 PMRD ptc-miR399f: 0.000000000000001 microPC miR399: 0.000001 | UniProt no hits RFAM mir-399: 8e-45 |
Identical with: vvi-MIR399h from miRBase (MNEST041675) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
