ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR408
source: PMRD, original name: vvi-miR408
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CGGGGACGAGGTAGTGCATGG mismatches: 3 bulges: 0 |
pre-miRNA
AAGAGGAAGACGGGGACGAGGTAGTGCATGGATGGAACTATTAACAGAAGAATGTTAAGCTGTTTTTGCTCTACCCATGCACTGCCTCTTCCCTGGCTCT
GTCTCTC
dot-bracket secondary structure
.((((..(((((((((.((((((((((((((.((((.(....(((((............)))))...).)))).)))))))))))))).))))))..)))
..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
AAGAGGAAGACGGGGACGAGGTAGTGCATGGATGGAACTATTAACAGAAGAATGTTAAGCTGTTTTTGCTCTACCCATGCACTGCCTCTTCCCTGGCTCT
GTCTCTC
dot-bracket secondary structure
.((((..(((((((((.((((((((((((((.((((.(....(((((............)))))...).)))).)))))))))))))).))))))..)))
..)))).
SIMILARITIES| miRBase vvi-MIR408: 4e-56 PMRD ptc-miR408: 0.000000000001 microPC miR408: 0.000000000001 | UniProt no hits RFAM MIR408: 7e-55 |
Identical with: vvi-MIR408 from miRBase (MNEST041683) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
