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ABOUT THIS RECORD

ID: MNEST054892
species: Vitis vinifera
miRNA family: MIR408
source: PMRD, original name: vvi-miR408

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGCACTGCCTCTTCCCTGGC

miRNA*
CGGGGACGAGGTAGTGCATGG

mismatches: 3
bulges: 0

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pre-miRNA
AAGAGGAAGACGGGGACGAGGTAGTGCATGGATGGAACTATTAACAGAAGAATGTTAAGCTGTTTTTGCTCTACCCATGCACTGCCTCTTCCCTGGCTCT
GTCTCTC


dot-bracket secondary structure
.((((..(((((((((.((((((((((((((.((((.(....(((((............)))))...).)))).)))))))))))))).))))))..)))
..)))).



SIMILARITIES
miRBase vvi-MIR408: 4e-56

PMRD ptc-miR408: 0.000000000001

microPC miR408: 0.000000000001
UniProt no hits

RFAM MIR408: 7e-55

Identical with: vvi-MIR408 from miRBase (MNEST041683)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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