ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR477
source: PMRD, original name: vvi-miR477
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCTCCCTCAAAGGCTTCCAA miRNA* GGAAGACAGTGGGGGACCTTG mismatches: 6 bulges: 0 |
pre-miRNA
GAAGTTGTCAATCTCCCTCAAAGGCTTCCAATTTTCCTGGCTGATTATCAAGGTTGGAAAGTTGGAAGACAGTGGGGGACCTTGGAAGCTTACC
dot-bracket secondary structure
.(((((..(((..(((((((....(((((((((((((.(.((........)).).)))))))))))))....)))))))..)))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
GAAGTTGTCAATCTCCCTCAAAGGCTTCCAATTTTCCTGGCTGATTATCAAGGTTGGAAAGTTGGAAGACAGTGGGGGACCTTGGAAGCTTACC
dot-bracket secondary structure
.(((((..(((..(((((((....(((((((((((((.(.((........)).).)))))))))))))....)))))))..)))..)))))...
SIMILARITIES| miRBase vvi-MIR477: 2e-48 PMRD ptc-miRf11218-akr: 0.0003 microPC no hits | UniProt no hits RFAM MIR477: 4e-31 |
Identical with: vvi-MIR477 from miRBase (MNEST041685) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
