ABOUT THIS RECORDspecies: Vitis vinifera
source: PMRD, original name: vvi-miR535e
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGCT miRNA* CGTGCTCTCTGTCGCTGTCATA mismatches: 2 bulges: 0 |
pre-miRNA
TGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCTGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTGTCGCTGTCATACAATCTTCT
C
dot-bracket secondary structure
....((((..(((((.(((.((((((((((((.((..(((.(((((.......))))).)))..)).)))))))))))).))).)))))..)))).....
.
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCTGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTGTCGCTGTCATACAATCTTCT
C
dot-bracket secondary structure
....((((..(((((.(((.((((((((((((.((..(((.(((((.......))))).)))..)).)))))))))))).))).)))))..)))).....
.
SIMILARITIES| miRBase vvi-MIR535c: 1e-52 PMRD vvi-miR535d: 1e-52 microPC miR535: 0.00000000008 | UniProt no hits RFAM MIR535: 3e-32 |
Identical with: vvi-miR535d from PMRD (MNEST054899) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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