ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: PMRD, original name: zma-miR166k
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGATTGTTGTCTGGCTCGGGG mismatches: 5 bulges: 0 |
pre-miRNA
GCATGCTCGGGTTAGGTCAGGGGGATTGTTGTCTGGCTCGGGGTCTCCGGTCGAGATCGATTCATAACATATACGTACGTGCTTCTAGCCTTGCCGGCGG
AGCTAGTCGTTGTCGTCGACCGGAGATTTCGGACCAGGCTTCAATCCCTTTGACCATGCGGCATTAGG
dot-bracket secondary structure
..((((.((.((..((((((((((((((..((((((..((..((((((((((((...((((...........(((.((..(((((..(((.....)))))
)))..))))).))))))))))))))))..))..))))))..)))))))))))))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GCATGCTCGGGTTAGGTCAGGGGGATTGTTGTCTGGCTCGGGGTCTCCGGTCGAGATCGATTCATAACATATACGTACGTGCTTCTAGCCTTGCCGGCGG
AGCTAGTCGTTGTCGTCGACCGGAGATTTCGGACCAGGCTTCAATCCCTTTGACCATGCGGCATTAGG
dot-bracket secondary structure
..((((.((.((..((((((((((((((..((((((..((..((((((((((((...((((...........(((.((..(((((..(((.....)))))
)))..))))).))))))))))))))))..))..))))))..)))))))))))))))).))))))....
SIMILARITIES| miRBase zma-MIR166k: 2e-92 PMRD sbi-miR166g: 3e-21 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.00000000000004 |
Identical with: zma-MIR166k from miRBase (MNEST042727) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
