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ABOUT THIS RECORD

ID: MNEST054967
species: Zea mays
miRNA family: MIR166
source: PMRD, original name: zma-miR166k

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCAATCCCT

miRNA*
GGATTGTTGTCTGGCTCGGGG

mismatches: 5
bulges: 0

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pre-miRNA
GCATGCTCGGGTTAGGTCAGGGGGATTGTTGTCTGGCTCGGGGTCTCCGGTCGAGATCGATTCATAACATATACGTACGTGCTTCTAGCCTTGCCGGCGG
AGCTAGTCGTTGTCGTCGACCGGAGATTTCGGACCAGGCTTCAATCCCTTTGACCATGCGGCATTAGG


dot-bracket secondary structure
..((((.((.((..((((((((((((((..((((((..((..((((((((((((...((((...........(((.((..(((((..(((.....)))))
)))..))))).))))))))))))))))..))..))))))..)))))))))))))))).))))))....



SIMILARITIES
miRBase zma-MIR166k: 2e-92

PMRD sbi-miR166g: 3e-21

microPC miR166: 0.0001
UniProt no hits

RFAM mir-166: 0.00000000000004

Identical with: zma-MIR166k from miRBase (MNEST042727)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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