ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: PMRD, original name: zma-miR166m
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGTTGGCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
TCCTTGGTCTGGGGGTTTGTGGGGAATGTTGGCTGGCTCGAGGCATCCGCGTCCTGGCTCGCAGTCGCAGCGCAGATCGTGTTTTGCCTGCTACCGGCCG
GACAGATCGAGAGGCGTCGGACCAGGCTTCATTCCTCGCAAACCGGTGCATCCCCA
dot-bracket secondary structure
..........((((((((((((((((((..(.((((..(((.((.((((.((((.(((.((..((.((((.(((((......))))))))).))))))))
)))....)).)).)).)))..)))).)..))))))))))))))........)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TCCTTGGTCTGGGGGTTTGTGGGGAATGTTGGCTGGCTCGAGGCATCCGCGTCCTGGCTCGCAGTCGCAGCGCAGATCGTGTTTTGCCTGCTACCGGCCG
GACAGATCGAGAGGCGTCGGACCAGGCTTCATTCCTCGCAAACCGGTGCATCCCCA
dot-bracket secondary structure
..........((((((((((((((((((..(.((((..(((.((.((((.((((.(((.((..((.((((.(((((......))))))))).))))))))
)))....)).)).)).)))..)))).)..))))))))))))))........)))).
SIMILARITIES| miRBase zma-MIR166m: 3e-85 PMRD sbi-miR166f: 2e-34 microPC miR166: 0.000002 | UniProt no hits RFAM mir-166: 2e-22 |
Identical with: zma-MIR166m from miRBase (MNEST042729) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
