ABOUT THIS RECORDspecies: Zea mays
source: PMRD, original name: zma-miR166u
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCACGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTTGGAGA mismatches: 6 bulges: 0 |
pre-miRNA
GTGGAATGTTGTCTGGTTGGAGACCTAACACCGCGAATCCCTTATCCATGCCATGGAAGCAGCATATGCCCGCCTGCATCTATCCATGCATGATGGTGGA
AGGTTTCGGACCACGCTTCATTCCCC
dot-bracket secondary structure
..((((((..((.(((((.(((((((..((((..(.....).....(((((.(((((.(((((........).)))).....))))))))))..))))..
))))))).))))).))..))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTGGAATGTTGTCTGGTTGGAGACCTAACACCGCGAATCCCTTATCCATGCCATGGAAGCAGCATATGCCCGCCTGCATCTATCCATGCATGATGGTGGA
AGGTTTCGGACCACGCTTCATTCCCC
dot-bracket secondary structure
..((((((..((.(((((.(((((((..((((..(.....).....(((((.(((((.(((((........).)))).....))))))))))..))))..
))))))).))))).))..))))))..
SIMILARITIES| miRBase zma-MIR166g: 4e-53 PMRD zma-miR166g: 4e-53 microPC miR166: 0.000006 | UniProt no hits RFAM mir-166: 0.0000000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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