ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR167
source: PMRD, original name: zma-miR167c
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGCTGTGGCAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
TGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCGGAGTGATCACGCGAGGAGAACAATAGCTCGAGGTGGTCATGCCTTGCTAGATCATGCT
GTGGCAGCCTCACTTCTTCCCGTCCTTGGGCA
dot-bracket secondary structure
.(((((((((((.((((((.(((((((((((((((((((..((.((((((((.((((...........))))..)))))))).))..)))))))))))).
.))))))).)))))).)))))....)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCGGAGTGATCACGCGAGGAGAACAATAGCTCGAGGTGGTCATGCCTTGCTAGATCATGCT
GTGGCAGCCTCACTTCTTCCCGTCCTTGGGCA
dot-bracket secondary structure
.(((((((((((.((((((.(((((((((((((((((((..((.((((((((.((((...........))))..)))))))).))..)))))))))))).
.))))))).)))))).)))))....)))))).
SIMILARITIES| miRBase zma-MIR167c: 6e-71 PMRD zma-miR167q: 5e-53 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 4e-63 |
Identical with: zma-miR167q from PMRD (MNEST054994) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
